


How to Find Significant Peaks in Python Using SciPy\'s find_peaks Function?
Oct 22, 2024 pm 08:33 PMFinding Peaks in Python/SciPy
Finding peaks in data is a common task in various fields, including signal processing, image analysis, and data analysis. Python provides several packages and functions for peak detection, including SciPy's scipy.signal.find_peaks function.
SciPy's Peak-Finding Algorithm
The find_peaks function takes a 1D array as input and returns the indices of the peaks. It employs a peak-finding algorithm that detects peaks based on several parameters:
- width: Minimum separation between peaks in samples.
- threshold: Minimum amplitude threshold for peak detection.
- distance: Minimum distance between consecutive peaks.
- prominence: Topographic prominence, which measures the relative height of a peak compared to its surroundings.
Prominence for Noise Rejection
The prominence parameter is particularly useful for distinguishing significant peaks from noise-induced peaks. Prominence is defined as the minimum height descent to get from the peak to any higher terrain. By setting a high prominence threshold, the algorithm can effectively filter out minor peaks caused by noise.
Example Usage
The following code demonstrates peak-finding in a noisy frequency-varying sinusoid using the find_peaks function:
<code class="python">import numpy as np import matplotlib.pyplot as plt from scipy.signal import find_peaks x = np.sin(2*np.pi*(2**np.linspace(2,10,1000))*np.arange(1000)/48000) + np.random.normal(0, 1, 1000) * 0.15 peaks_prominence, _ = find_peaks(x, prominence=1) plt.plot(x) plt.plot(peaks_prominence, x[peaks_prominence], "ob") plt.legend(['Signal', 'Peaks (prominence)']) plt.show()</code>
As demonstrated in the plot, the find_peaks function finds peaks with both high amplitude and prominence, effectively filtering out noise-induced peaks.
Other Peak-Finding Options
In addition to find_peaks, SciPy also provides other peak-finding functionality, such as peak_widths and argrelmax. These functions may be more suitable for specific applications or adjustments.
Conclusion
SciPy's scipy.signal.find_peaks function provides a robust and versatile solution for peak-finding in Python. Its adjustable parameters, including prominence, allow for customization to detect significant peaks in various types of data.
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